Welcome to Cellects!
Cellects is a software designed to analyze organisms that grow or move on an immobile surface.
It processes timelapse experiments provided either as a set of images or as a video, recorded with a fixed camera observing one or several stationary arenas.
The user guide is structured in two main parts:
- Setting up a first analysis, which explains how to quickly set up a first analysis using the three core steps of Cellects:
data specification, initial image analysis, and video tracking. - Improving the analysis, which details all available options to adapt Cellects to specific experimental conditions and to fine-tune an existing workflow.
Getting Started
Discover Cellects and install it.
- Quick start
- What is Cellects?
- Installation
Setting up a first analysis
From data localisation to image analysis and tracking.
- Data localisation
- Image analysis window
- Video tracking window
Improving the analysis
Tune advanced parameters and scale to multiple folders.
- Advanced parameters
- Required outputs
- Multiple folders
Use Cases
Concrete examples and typical pipelines.
Contributing
How to help, development workflow, guidelines.
API Reference
Auto-generated API documentation.